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Course Criteria
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3.00 Credits
Credits: 3 Topics are presented as three-week units: protein sequence, structure prediction, and modeling methods; nucleic acid sequence and structure prediction, and evolutionary models; gene structure prediction in prokaryotes and eukaryotes; image analysis, and biomedical applications. Prerequisites BIOL 213, IT 108, IT 208, or CS 112 (instead of IT 108 and IT 208), STAT 344, or STAT 250. Hours of Lecture or Seminar per week 3 Hours of Lab or Studio per week 0
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3.00 Credits
Credits: 3 Topics are presented as three-week units: the design and use of parallel genomics platforms, mapping the measurements to biomolecules; approaches for inferring biological pathways; simulation methods for the dynamics of biomolecules; systems approaches to biology. Prerequisites BINF 401 and BINF 403. Hours of Lecture or Seminar per week 3 Hours of Lab or Studio per week 0
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1.00 Credits
Credits: 1 Laboratories will introduce students to bioinformatics tools designed to answer research problems in the topics covered in lectures, such as sequence alignment, sequence pattern recognition, structural conformation modeling, phylogenetic analysis methods and image comparisons.
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1.00 Credits
Credits: 1 Laboratories will introduce students to research bioinformatics tools relevant to lecture topics such as: the correspondence of measured fragments to parent biomolecules, inference methods for gene and protein networks, predicting system outputs given specified inputs. Prerequisites Concurrent enrollment in BINF 402 and passing grades in BINF 401 and 403. Hours of Lecture or Seminar per week 0 Hours of Lab or Studio per week 3
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4.00 Credits
Credits: 4 The use of bioinformatics has become pervasive throughout the life sciences. This course will teach students how to understand the basis of and use of bioinformatics software in database searching, sequence analysis, gene identification, genomics, protein structure and phylogeny. Prerequisites BIOL 213 and either BIOL 482 or BIOL 483/CHEM 463. Hours of Lecture or Seminar per week 3 Hours of Lab or Studio per week 3
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3.00 Credits
Credits: 3 Cross-Listed with PHYS 370 The course offers a broad introducation into molecular biophysics. The course demonstrates that the application of methods of physics provides a unique opportunity to tackle complex biological problems. The course is mainly designed for the students majoring in physics or chemistry, but it is also useful for the biology majors interested in bioinformatics and computational biology. Prerequisites PHYS 307 or CHEM 331 and CHEM 332 or permission of instructor. Hours of Lecture or Seminar per week 3
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1.00 Credits
Credits: 1 A project is chosen and completed under the guidance of a Bioinformatics Department faculty member. Prerequisites The bioinformatics minor core classes. Notes An oral progress report with a poster at the fall semester Bioinformatics Student Research Day is required. Hours of Lecture or Seminar per week 1 Hours of Lab or Studio per week 3
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1.00 Credits
Credits: 1 A project is chosen and completed under the guidance of a Bioinformatics Department faculty member. Prerequisites BINF 491. Notes A written thesis in standard format is required. Hours of Lecture or Seminar per week 1 Hours of Lab or Studio per week 3
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3.00 Credits
Credits: 3 Introduction to methods and tools for pairwise sequence comparison, multiple sequence alignment, phylogenetic analysis, protein structure prediction and comparison, database similarity searches, and discovery of conserved patterns in protein sequence and structures. Prerequisites Graduate standing, or permission of instructor. Hours of Lecture or Seminar per week 3 Hours of Lab or Studio per week 0
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3.00 Credits
Credits: 3 Intensive review of biochemistry, molecular biology, and cell biology necessary to begin research in bioinformatics. Topics include protein biochemistry, nucleic acids biochemistry, DNA replication, transcription, and translation, recombinant DNA technology, genomics, molecular structure of genes and chromosomes, and gene expression and control. Prerequisites Undergraduate background in biochemistry or cell biology, or permission of instructor. Hours of Lecture or Seminar per week 3 Hours of Lab or Studio per week 0
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