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  • BSTA 630: Statistical Methods for Data Analysis I

    3.00 Credits
    University of Pennsylvania

    Shults and Putt. Prerequisite(s): Multivariable calculus and linear algebra, BSTA 620 (may be taken concurrently). This first course in statistical methods for data analysis is aimed at first year Biostatistics degree candidates. It focuses on the analysis of continuous data, and includes descriptive statistics, such as central tendencies, dispersion measures, shapes of a distribution, graphical representations of distributions, transformations, and testing for goodness of fit for a distribution. Populations, samples, hypotheses of differences and equivalence, and errors will be defined. One and two sample t-tests, analysis of variance, correlation, as well as non-parametric tests and correlations will be covered. Estimation, including confidence intervals, and robust methods will be discussed. The relationship between outcome variables and explanatory variables will be examined via regression analysis, including single linear regression, multiple regression, model fitting and testing, partial correlation, residuals, multicolinearity. Examples of medical and biologic data will be used throughout the course, and use of computer software demonstrated.
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  • BSTA 631: Statistical Methods and Data Analysis II

    3.00 Credits
    University of Pennsylvania

    Gimotty. Prerequisite(s): linear algebra, calculus, BSTA 630, BSTA 620, BSTA 621 (may be taken concurrently). This is the second half of the methods sequence and focuses on categorical data and survival data. Topics in categorical data to be covered include defining rates, incidence and prevalence, the chi-squared test, Fisher's exact test and its extension, relative risk and odds-ratio, sensitivity, specificity, predictive values, logistic regression with goodness of fit tests, ROC curves, Mantel-Haenszel test, McNemar's test, the Poisson model, and the Kappa statistic. Survival analysis will include defining the survival curve, censoring, and the hazard function, the Kaplan-Meier estimate, Greenwood's formula and confidence bands, the log rank test, and Cox's proportional hazards regression models. Examples of medical and biologic data will be used throughout the course, and use of computer software demonstrated.
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  • BSTA 651: Introduction to Linear Models and Generalized Linear Models

    3.00 Credits
    University of Pennsylvania

    Tu. Prerequisite(s): linear algebra, calculus, BSTA 630, BSTA 620, BSTA 621 (may be taken concurrently). This course extends the content on linear models in BSTA 630 and BSTA 631 to more advanced concepts and applications of linear models. Topics include the matrix approach to linear models including regression and analysis of variance, general linear hypothesis, estimability, polynomial, piecewise, ridge, and weighted regression, regression and collinearity diagnostics, multiple comparisons, fitting strategies, simple experimental designs (block designs, split plot), random effects models, Best Linear Unbiased Prediction. In addition, generalized linear models will be introduced with emphasis on the binomial, logit and Poisson log-linear models. Applications of methods to example data sets will be emphasized.
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  • BSTA 690: Consulting Laboratory I

    3.00 Credits
    University of Pennsylvania

    Faculty. Prerequisite(s): BSTA 630. Participation in the consulting laboratory is a requirement for both the Master's and Ph.D. degrees. This course covers general principles of statistical consulting and statistical consulting experience. There is training on statistical programming, preparation of reports, presentations, and the communication aspects of consulting. Each student will be expected to join one of several project teams consisting of faculty, research staff, and graduate student consultants; attend meetings along with the project team and associated investigators; participate in all or part of the design, management, analysis and reporting stages of a project; and gain valuable experience in working with actual research projects.
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  • BSTA 774: Statistical Methods for Evaluating Diagnostic Tests

    3.00 Credits
    University of Pennsylvania

    Gimotty. Prerequisite(s): BSTA 510, BSTA 630, BSTA 631 or equivalent; permission of instructor. This course will cover statistical methodology for evaluating diagnostic tests.The topics will include: estimation of ROC curves, comparing multiple diagnostic tests, developing diagnostic tests using predictive models, measurement error effects on diagnostic tests, random effects models for multi-reader studies, verification bias in dosease classification, methods for time-dependent disease classifications, study design issues, related software, and metaanalyses for diagnostic test data.
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  • BSTA 820: Statistical Inference III

    3.00 Credits
    University of Pennsylvania

    Faculty. Prerequisite(s): To be advised. Statistical inference including estimation, confidence intervals, hypothesis tests and non-parametric methods.
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  • CAMB 421: Molecular Genetics

    3.00 Credits
    University of Pennsylvania

    Weinberg. Prerequisite(s): Intermediate level course in Genetics/Molecular Biology (equivalent to Biol 221). A detailed analysis of gene structure and expression in both prokaryotic and eukaryotic organisms. Advances in DNA technology and genomics will be emphasized. The application of these advances to the molecular genetic analysis of development, cell function, and disease will be discussed.
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  • CAMB 480: Advanced Cell Biology

    3.00 Credits
    University of Pennsylvania

    Wei Guo. Prerequisite(s): College level biochemistry and cell biology. This course is designed for beginning graduate students and advanced undergraduate students with a particular enthusiasm for Cell Biology. CAMB/BIOL 480 does not attempt to cover all aspects of cell biology, and is therefore not appropriate for students seeking a lecture course that provides a comprehensive survey of the field. Rather, the primary objective of this course is to teach those students considering a career in the biomedical sciences how to read, discuss, and question research papers effectively. Intensive classroom discussions focus on the experimental methods used, results obtained, interpretation of these results in the context of cell structure and function, and implications for further studies. There is no assigned text; students learn to critically evaluate current literature by reading original papers on selected topics in modern cell biology. Accordingly, class participation/discussion is essential and the grade will be determined significantly by that. In addition, there will be two exams including answering short questions and an assay critiquing an original paper that is selected on a topic in Cell Biology.
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  • CAMB 482: Current Topics in Plant Molecular Biology

    3.00 Credits
    University of Pennsylvania

    Prerequisite(s): BIOL 205 or permission of instructor. Lectures and student seminars on topics in plant molecular genetics, cell biology, physiology, development and other areas of current research in plants.
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